I should have used basename only to check shims

pyenv.d/rehash/conda.bash

@@ -19,7 +19,7 @@ for shim in $(cat "${BASH_SOURCE%/*}/conda.d/"*".list" | sort | uniq | sed -e 's
   fi
 done
 shopt -u nullglob
-eval "conda_shim(){ case \"\$1\" in ${shims[@]} *)return 1;;esac;}"
+eval "conda_shim(){ case \"\${1##*/}\" in ${shims[@]} *)return 1;;esac;}"
 
 # override `make_shims` to avoid conflict between pyenv-virtualenv's `envs.bash`
 # https://github.com/pyenv/pyenv-virtualenv/blob/v20160716/etc/pyenv.d/rehash/envs.bash

pyenv.d/rehash/source.bash

@@ -8,7 +8,7 @@ for shim in $(cat "${BASH_SOURCE%/*}/source.d/"*".list" | sort | uniq | sed -e '
   fi
 done
 shopt -u nullglob
-eval "source_shim(){ case \"\$1\" in ${shims[@]} *)return 1;;esac;}"
+eval "source_shim(){ case \"\${1##*/}\" in ${shims[@]} *)return 1;;esac;}"
 
 cat > "${PROTOTYPE_SOURCE_SHIM_PATH}" <<SH
 #!/usr/bin/env bash